limorhyde2 is an approach to analyze rhythmic, genome-scale data in a way that focuses on effect sizes. For a detailed description of limorhyde2 along with examples showing its utility on data from one or more conditions, please wait for the preprint.
Installation
If you use RStudio, go to Tools -> Global Options… -> Packages -> Add… (under Secondary repositories), then enter:
- Name: hugheylab
- Url: https://hugheylab.github.io/drat/
You only have to do this once. Then you can install or update the package by entering:
if (!requireNamespace('remotes', quietly = TRUE))
install.packages('remotes')
remotes::install_github('stephens999/ashr')
if (!requireNamespace('BiocManager', quietly = TRUE))
install.packages('BiocManager')
BiocManager::install('limorhyde2')Alternatively, you can install or update the package by entering:
if (!requireNamespace('remotes', quietly = TRUE))
install.packages('remotes')
remotes::install_github('stephens999/ashr')
if (!requireNamespace('BiocManager', quietly = TRUE))
install.packages('BiocManager')
BiocManager::install('limorhyde2', site_repository = 'https://hugheylab.github.io/drat/')Usage
See the examples and detailed guidance in the reference documentation.
